Uses of Enum Class org.snpeff.SnpEff.GeneDatabaseFormat (SnpEff 5.4 API)

Packages that use SnpEff.GeneDatabaseFormat

Package

Description

org.snpeff.snpEffect.commandLine

Uses of SnpEff.GeneDatabaseFormat in org.snpeff

Subclasses with type arguments of type SnpEff.GeneDatabaseFormat in org.snpeff

Modifier and Type

Class

Description

static enum

SnpEff.GeneDatabaseFormat

Available gene database formats

Methods in org.snpeff that return SnpEff.GeneDatabaseFormat

Modifier and Type

Method

Description

static SnpEff.GeneDatabaseFormat

SnpEff.GeneDatabaseFormat.valueOf(String name)

Returns the enum constant of this class with the specified name.

static SnpEff.GeneDatabaseFormat[]

SnpEff.GeneDatabaseFormat.values()

Returns an array containing the constants of this enum class, in the order they are declared.
Uses of SnpEff.GeneDatabaseFormat in org.snpeff.snpEffect.commandLine

Methods in org.snpeff.snpEffect.commandLine that return SnpEff.GeneDatabaseFormat

Modifier and Type

Method

Description

protected SnpEff.GeneDatabaseFormat

SnpEffCmdBuild.guessGenesFormat()

Try to guess database format by checking which file type is present