MicroCosmFileIterator (SnpEff 5.4 API)

java.lang.Object

org.snpeff.fileIterator.FileIterator<MicroCosmEntry>

org.snpeff.fileIterator.LineClassFileIterator<MicroCosmEntry>

org.snpeff.fileIterator.microCosm.MicroCosmFileIterator

All Implemented Interfaces:: Iterable<MicroCosmEntry>, Iterator<MicroCosmEntry>

public class MicroCosmFileIterator extends LineClassFileIterator<MicroCosmEntry>

Iterate on each line of a MicroCosm predictions References: http://www.ebi.ac.uk/enright-srv/microcosm/

Author:: pcingola

Field Summary

Fields inherited from class LineClassFileIterator
clazz, debug, FIELD_NAME_SEPARATOR, fieldByName, fieldNames, fieldStr, separator

Fields inherited from class FileIterator
autoClose, countNewLineChars, fileName, fileSize, line, lineNum, next, nextLine, reader, verbose
Constructor Summary

Constructors

Constructor

Description

MicroCosmFileIterator(String fileName)
Method Summary

Methods inherited from class LineClassFileIterator
createObject, fieldMap, iterator, readNext, setSeparator

Methods inherited from class FileIterator
close, countNewLineChars, getFilePointer, getLine, getLineNum, guessNewLineChars, hasNext, hasSeek, init, isDebug, load, next, readLine, ready, remove, seek, setAutoClose, setDebug, setVerbose, toString

Methods inherited from class Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface Iterable
forEach, spliterator

Methods inherited from interface Iterator
forEachRemaining

Constructor Details
- MicroCosmFileIterator
  
  public MicroCosmFileIterator(String fileName)