Class Jaspar

java.lang.Object
org.snpeff.motif.Jaspar
All Implemented Interfaces:
Iterable<Pwm>
public class Jaspar extends Object implements Iterable<Pwm>
Load PWM matrices from a Jaspar file
Author:
pablocingolani

  • Constructor Details

    • Jaspar

      public Jaspar()

  • Method Details

    • getPwm

      public Pwm getPwm(String pwmId)

    • iterator

      public Iterator<Pwm> iterator()
      Specified by:
      iterator in interface Iterable<Pwm>

    • load

      public void load(String jasparMatrixFile)
      Load matrix file
      Parameters:
      jasparMatrixFile -

    • setVerbose

      public void setVerbose(boolean verbose)